B12 Biosynthesis in Pseudomonas

The Anaerobic Pathway was worked out in Pseudomonas denitrificans in a collaborative effort between geneticists and biochemists at Rhone-Poulenc and chemists at Cambridge University, primarily in the lab of Professor Sir Allan Battersby. Five clones bearing cobalamin biosynthetic genes have been sequenced from this organism:

The reaction sequence shown below is still speculative. In particular, the addition of 1-amino-2-propanol-phosphate and DMB-Ribose have not been authenticated.

Step Intermediate Reaction Gene
1 Uroporphyinorgen III Methylation at C2 cobA
2 Precorrin-1 Methylation at C7 cobA
3 Precorrin-2 Methylation at C20 cobI
4 Precorrin-3A Reduction & Lactonization cobG
5 Precorrin-3B Methylation at C17 cobJ
6 Precorrin-4A Ring Contraction n/a
7 Precorrin-4B Methylation at C11 cobM
8 Precorrin-5 Acetate Extrusion cobM
9 Precorrin-5x Methylation at C1 cobF
10 Precorrin-6x Ring Reduction cobK
11 Precorrin-6y Methylation at C15 cobL (5')
12 Precorrin-7 Methylation at C5 cobL (5')
13 Precorrin-8w Decarboxylation cobL (3')
14 Precorrin-8x Methyl-Migration cobH
15 Hydrogenobyrinic acid Amidations at a & c cobB
16 Hydrogenobyrinic acid a,c-Diamide Cobalt Insertion cobN,S,T
17 Cob(II)yrinic acid a,c-Diamide Cobalt Reduction ?
18 Cobyrinic acid a,c-Diamide Adenosylation cobO
19 Adenosyl-Cobyrinic acid a,c-Diamide Amidations at b, d, e & g cobQ
20 Adenosyl-Cobyric acid Aminopropanol Addition cobC
21 Adenosyl-Cobinamide Phosphate Guanidylation cobP
22 Adenosyl-GDP-Cobinamide DMB Addition cobV
23 Adenosyl-Cobalamin    

Step

Chemical Structure

Reactions

Salmonella Enzyme

1

Top

Uroporphyrinogen III Methylation at C2

CobA

SAM Arrow

CysG
2

Top

Precorrin-1 Methylation at C7

CobA

SAM Arrow

CysG
3

Top

Precorrin-2 Methylation at C20

CobI

SAM Arrow

CbiL
4

Top

Precorrin-3A Reduction and Lactone Formation

CobG

FAD Arrow

 
5

Top

Precorrin-3B Methylation at C17

CobJ

SAM Arrow

CbiH
6

Top

Precorrin-4A Spontaneous
Ring Contraction

 

Ring Contraction Arrow

 
7

Top

Precorrin-4B

Methylation at C11

CobM

Methylation Arrow

CbiF

8

Top

Precorrin-5

Acetate Extrusion

CobM

Acetate Extrusion Arrow

CbiF?
9

Top

Precorrin-5x

Methylation at C1

CobF

Methylation Arrow

??
10

Top

Precorrin-6x

Ring Reduction

CobK

NADPH Arrow

??
11

Top

Precorrin-6y

Methylation at C15

CobL (N)

Methylation Arrow

CbiE
12

Top

Precorrin-7

Methylation at C5

CobL (N)

Methylation Arrow

CbiE
13

Top

Precorrin-8w

Decarboxylation

CobL (C)

Decarboxylation Arrow

CbiT
14

Top

Precorrin-8x

Methyl Migration

CobH

CbiC
15

Top

Hydrogenobyrinic acid

a,c - Amidations

CobB

2 Glutamine Arrow

CbiA
16

Top

Hydrogenobyrinic acid

Cobalt Insertion

CobN,S,T

Cobalt insertion arrow

CysG

or

CobK

17

Top

Cob(II)yrinic acid a,d,-Diamide

Cobalt Reduction

??

Reduction Arrow

??
18

Top

Cobyrinic acid a,c,-Diamide

Adenosylation

CobO

Adenosylation Arrow

CobA
19

Top

Adenosyl-Cobyrinic acid, a,c-Diamide

b, d, e, g Amidations

CobQ

4 Glutamine Addition Arrow

CbiP

20

Top

Adenosyl-Cobyric acid

Aminopropanol
Addition

CobC

Amino-propanol Addition Arrow

CbiB

21

Top

Adenosyl-Cobinamide Phosphate

Guanidylation

CobP

GTP Arrow

CobU

22

Top

Adenosyl-GDP-Cobinamide

DMB Addition

CobV

DMB-Ribose Arrow

CobS

23

Top

Adenosyl-Cobalamin    

Last Updated 14 August 2006, by JG Lawrence